OBO Foundry dashboard analysis¶

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/tmp/ipykernel_390/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 2 10811.5 14763.682484 372.0 5591.75 10811.5 16031.25 21251.0
Declaration 2 1030.5 1195.717567 185.0 607.75 1030.5 1453.25 1876.0
DisjointClasses 2 10.5 12.020815 2.0 6.25 10.5 14.75 19.0
SubClassOf 2 6411.0 8857.219541 148.0 3279.50 6411.0 9542.50 12674.0
DataPropertyRange 1 5.0 7.071068 0.0 2.50 5.0 7.50 10.0
InverseObjectProperties 1 1.5 2.121320 0.0 0.75 1.5 2.25 3.0
SubObjectPropertyOf 1 4.0 5.656854 0.0 2.00 4.0 6.00 8.0
SymmetricObjectProperty 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
AnnotationPropertyRangeOf 1 0.5 0.707107 0.0 0.25 0.5 0.75 1.0
ClassAssertion 1 9.5 13.435029 0.0 4.75 9.5 14.25 19.0
DifferentIndividuals 1 1.0 1.414214 0.0 0.50 1.0 1.50 2.0
EquivalentClasses 1 4.0 5.656854 0.0 2.00 4.0 6.00 8.0
SubAnnotationPropertyOf 1 8.5 12.020815 0.0 4.25 8.5 12.75 17.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 2 13353.0 18250.426022 448.0 6900.50 13353.0 19805.50 26258.0
DataHasValue 1 464.0 656.195093 0.0 232.00 464.0 696.00 928.0
ObjectOneOf 1 1.5 2.121320 0.0 0.75 1.5 2.25 3.0
ObjectSomeValuesFrom 1 4530.0 6406.387438 0.0 2265.00 4530.0 6795.00 9060.0

OBO Score (Experimental)

ontology score score_dash score_impact
0 gndo 0.400 0.800 0.0
1 occo 0.374 0.749 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 2.0 0.3870 0.018385 0.374 0.38050 0.3870 0.39350 0.4
score_dash 2.0 0.7745 0.036062 0.749 0.76175 0.7745 0.78725 0.8
score_impact 2.0 0.0000 0.000000 0.000 0.00000 0.0000 0.00000 0.0

OBO dependency graph